Английская Википедия:Genome Taxonomy Database

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The Genome Taxonomy Database (GTDB) is an online database that maintains information on a proposed nomenclature of prokaryotes, following a phylogenomic approach based on a set of conserved single-copy proteins. In addition to resolving paraphyletic groups, this method also reassigns taxonomic ranks algorithmically, updating names in both cases.[1] Information for archaea was added in 2020,[2] along with a species classification based on average nucleotide identity.[3] Each update incorporates new genomes as well as automated and manual curation of the taxonomy.[4]

An open-source tool called GTDB-Tk is available to classify draft genomes into the GTDB hierarchy.[5] The GTDB system, via GTDB-Tk, has been used to catalogue not-yet-named bacteria in the human gut microbiome and other metagenomic sources.[6][7]

The GTDB is incorporated into the Bergey's Manual of Systematics of Archaea and Bacteria in 2019 as its phylogenomic resource.[8]

See also

References

Шаблон:Reflist

Further reading

  1. Шаблон:Cite journal
  2. Шаблон:Cite journal
  3. Шаблон:Cite journal
  4. For information on each update, see relevant change logs. For notable, paper-worthy changes, see "Cite GTDB" section on the About page.
  5. Шаблон:Cite journal
  6. Шаблон:Cite journal
  7. Шаблон:Cite journal
  8. Шаблон:Cite web